FastQCFastQC Report
Mon 2 May 2016
SRR3192397_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192397_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92494632
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA5340590.5773945886935363No Hit
GTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGT5000560.5406324552975139No Hit
GTTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGC4269820.4616289516131055No Hit
GCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTT4235300.4578968431378807No Hit
TTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCA4226500.45694543657409226No Hit
AGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTG2340530.25304495508452857No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG2113450.22849434116349585No Hit
ATTTGAAGTAGATAGAAACCGACCTGGATTACTCCGGTCTGAACTCAGAT1943750.21014733049589301No Hit
CAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTT1736700.18776224765130156No Hit
GGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACC1696040.18336631686906976No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1658170.17927202521331184No Hit
CACGGGAGTTTTGACCTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTC1414570.15293536169753072No Hit
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAA1400330.15139581289430937No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA1377400.14891675010934688No Hit
AATTTGAAGTAGATAGAAACCGACCTGGATTACTCCGGTCTGAACTCAGA1354150.14640309072206484No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT1287410.1391875368507872No Hit
CGGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCA1261740.1364122406584633No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAA1237190.13375803257425792No Hit
CTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACCTG1228880.1328596020577713No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1099610.11888365586448302No Hit
GTGTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGC951170.10283515696348736No Hit
GGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTG938590.10147507803479883No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTTCGC253800.024.960487
CTCGCTA695150.023.8074558
TCGCTAT732550.022.942049
ACGGGGT429650.022.5221861
GTCTCGC757850.022.000696
CGCGCGA91200.021.220741
GGGGTCT1958950.020.6201423
GGGGGGT621450.020.5799261
GATGTGT626250.020.1101552
CGAACCT805600.020.0445778-79
AACGAAC809300.020.00562176-77
GGTCTCG870250.019.7048055
TCTCGCT858300.019.6969787
ATAGCGG832550.019.46524888-89
CAAACGA836250.019.38642574-75
CACTTCG332750.019.3379276
TAAGCGT285900.019.20341982-83
GGGGGTC1373050.018.9117532
ACGTAGG871950.018.72773252-53
TCACGTA867700.018.71675550-51