Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192400_2_val_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 94925479 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-100 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 110875 | 0.0 | 46.209705 | 1 |
GTATCAA | 192980 | 0.0 | 37.48429 | 1 |
GTACATG | 357990 | 0.0 | 33.384144 | 1 |
GAGTACA | 219815 | 0.0 | 33.14906 | 1 |
TACATGG | 365365 | 0.0 | 32.28193 | 2 |
CAACGCA | 220875 | 0.0 | 31.783743 | 5 |
ATCAACG | 226655 | 0.0 | 31.012945 | 3 |
AGTACAT | 232470 | 0.0 | 30.454252 | 2 |
TCAACGC | 237295 | 0.0 | 29.867004 | 4 |
ACATGGG | 388565 | 0.0 | 29.848297 | 3 |
AACGCAG | 236860 | 0.0 | 29.811535 | 6 |
CTAGTAC | 38815 | 0.0 | 29.181389 | 3 |
TATCAAC | 245665 | 0.0 | 29.016193 | 2 |
CTAACGC | 15825 | 0.0 | 28.972837 | 3 |
TAACGCC | 15675 | 0.0 | 28.604076 | 4 |
CATGGGG | 310060 | 0.0 | 27.712368 | 4 |
CTGTGCG | 39900 | 0.0 | 27.458086 | 9 |
GTACTAG | 29320 | 0.0 | 26.547396 | 1 |
TCTAACG | 17060 | 0.0 | 26.311825 | 2 |
ACGCAGA | 278070 | 0.0 | 25.056383 | 7 |