Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192398_2_val_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 66565696 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-100 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG | 274602 | 0.4125277981018932 | No Hit |
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG | 262383 | 0.3941714963815597 | No Hit |
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA | 191662 | 0.28792908587630484 | No Hit |
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA | 185623 | 0.27885684542380507 | No Hit |
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT | 178728 | 0.26849865732644035 | No Hit |
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT | 167625 | 0.2518188948253467 | No Hit |
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG | 127160 | 0.19102932537504003 | No Hit |
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG | 122621 | 0.18421049785162616 | No Hit |
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG | 118788 | 0.17845227668016872 | No Hit |
GTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAG | 89315 | 0.13417571717420337 | No Hit |
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC | 84398 | 0.12678902959265986 | No Hit |
GTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAG | 84161 | 0.1264329903498643 | No Hit |
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT | 77015 | 0.11569773115569917 | No Hit |
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGAT | 75713 | 0.11374176873325263 | No Hit |
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGAT | 69548 | 0.10448024159470969 | No Hit |
CAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAG | 68436 | 0.10280971147661401 | No Hit |
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT | 67837 | 0.10190984858026572 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCGATC | 18620 | 0.0 | 54.27915 | 2 |
GGGCGAT | 20130 | 0.0 | 50.11703 | 1 |
CGGTGGC | 115415 | 0.0 | 46.76004 | 1 |
GCGGTGG | 58095 | 0.0 | 44.01382 | 1 |
GCGATCT | 24580 | 0.0 | 41.080242 | 3 |
CGATCTG | 27345 | 0.0 | 37.38917 | 4 |
GGTGGCG | 148900 | 0.0 | 36.140526 | 2 |
GGCGCGT | 159615 | 0.0 | 33.672623 | 5 |
TGGCGCG | 159635 | 0.0 | 33.66366 | 4 |
GTGGCGC | 162200 | 0.0 | 33.15135 | 3 |
GCGATTT | 31570 | 0.0 | 32.354027 | 94 |
GCGCGTG | 170400 | 0.0 | 31.564335 | 6 |
CGCGTGC | 182785 | 0.0 | 29.424938 | 7 |
ACCCGGC | 23700 | 0.0 | 28.97664 | 5 |
TCACCCG | 23355 | 0.0 | 28.920813 | 3 |
CGGCCCG | 24255 | 0.0 | 28.170992 | 8 |
GCGTGCC | 191555 | 0.0 | 28.118195 | 8 |
CGTGCCT | 203930 | 0.0 | 26.503431 | 9 |
CACCCGG | 27250 | 0.0 | 25.787357 | 4 |
TTCGTTG | 12970 | 0.0 | 25.150915 | 94 |