FastQCFastQC Report
Mon 2 May 2016
SRR3192401_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192401_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95735344
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2084790.21776596948353788No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1964500.20520112195972262No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1465160.15304274667880233No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA1237650.051.3406031
GTATCAA2049600.037.4606551
GAGTACA2335550.034.667241
AGTACAT2457550.032.1466752
GTACATG3546000.032.0129281
TACATGG3626750.030.8745352
CAACGCA2489900.030.1834225
ATCAACG2512900.029.7380983
TCAACGC2649950.028.5377164
ACATGGG3875500.028.3761333
AACGCAG2713950.027.9810816
TATCAAC2728850.027.829932
CTAACGC159050.026.0894183
CTAGTAC383350.025.97363
CATGGGG3119000.025.7071194
TAACGCC160900.025.2073334
GTACTAG289600.025.006331
CTGTGCG403250.024.5249129
GTGGTAT461150.023.9519351
TCTAACG169350.023.7012062