FastQCFastQC Report
Tue 3 May 2016
SRR3192400_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192400_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95791942
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1954950.20408292797738664No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1626230.169766889160677No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1080860.11283412544240935No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA1133250.048.859551
GTATCAA1964350.040.090251
GTACATG3610150.036.0546461
GAGTACA2205000.035.8745961
TACATGG3677650.034.840132
CAACGCA2248000.034.109495
ATCAACG2301900.033.300373
AGTACAT2334800.033.0673452
ACATGGG3929950.032.1042823
TCAACGC2419400.031.8630164
AACGCAG2422450.031.8493236
TATCAAC2503250.031.0391222
CTAACGC174400.030.0738493
CATGGGG3147150.029.7281364
CTAGTAC403350.029.6503093
TAACGCC172150.029.6444874
GTACTAG293500.029.1037651
CTGTGCG409500.028.1449349
TCTAACG183450.027.2856222
ACGCAGA2809750.027.0492657