Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192400_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 95791942 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 195495 | 0.20408292797738664 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 162623 | 0.169766889160677 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 108086 | 0.11283412544240935 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 113325 | 0.0 | 48.85955 | 1 |
GTATCAA | 196435 | 0.0 | 40.09025 | 1 |
GTACATG | 361015 | 0.0 | 36.054646 | 1 |
GAGTACA | 220500 | 0.0 | 35.874596 | 1 |
TACATGG | 367765 | 0.0 | 34.84013 | 2 |
CAACGCA | 224800 | 0.0 | 34.10949 | 5 |
ATCAACG | 230190 | 0.0 | 33.30037 | 3 |
AGTACAT | 233480 | 0.0 | 33.067345 | 2 |
ACATGGG | 392995 | 0.0 | 32.104282 | 3 |
TCAACGC | 241940 | 0.0 | 31.863016 | 4 |
AACGCAG | 242245 | 0.0 | 31.849323 | 6 |
TATCAAC | 250325 | 0.0 | 31.039122 | 2 |
CTAACGC | 17440 | 0.0 | 30.073849 | 3 |
CATGGGG | 314715 | 0.0 | 29.728136 | 4 |
CTAGTAC | 40335 | 0.0 | 29.650309 | 3 |
TAACGCC | 17215 | 0.0 | 29.644487 | 4 |
GTACTAG | 29350 | 0.0 | 29.103765 | 1 |
CTGTGCG | 40950 | 0.0 | 28.144934 | 9 |
TCTAACG | 18345 | 0.0 | 27.285622 | 2 |
ACGCAGA | 280975 | 0.0 | 27.049265 | 7 |